fairmd.lipids.auxiliary

Python files

• fairmd.lipids.auxiliary.jsonEncoders module
• fairmd.lipids.auxiliary.mollib module
• fairmd.lipids.auxiliary.opconvertor module
• fairmd.lipids.auxiliary.routines module

Module contents

class fairmd.lipids.auxiliary.CompactJSONEncoder(*args, **kwargs)

Bases: JSONEncoder

A JSON Encoder that puts small containers on single lines.

Originally taken from the GiST of @jannismain.

CONTAINER_TYPES = (<class 'list'>, <class 'tuple'>, <class 'dict'>)

Container datatypes include primitives or other containers.

MAX_WIDTH = 150

Maximum width of a container that might be put on a single line.

MAX_ITEMS = 10

Maximum number of items in container that might be put on single line.

encode(o)

Encode JSON object o with respect to single line lists.

iterencode(o, **kwargs)

Required to also work with json.dump.

property indent_str: str

fairmd.lipids.auxiliary.block_average_time_series(arr: ndarray, blocksize: float) → ndarray

Return block-average of (N,2) array.

Parameters:

• arr – numpy array (N,2)

• blocksize – timeframe for slice blocks

Returns:

block-averaged array