developer.ProcessInfoFile module

Executes standard pipeline of processing for an info file.

Note

This file is only meant to be used by automated workflows. Users of the fairmd-lipids repository can safely ignore it.

developer.ProcessInfoFile.run_analysis(info_file_path: str) → None

Run full analysis of info-file

developer.ProcessInfoFile.run_dry_run(info_file_path: str) → None

Run AddData dry-run for pre-analysis of info file to rule out errors

developer.ProcessInfoFile.setup_folders() → tuple[str, str]

Set up folders for processing info file

developer.ProcessInfoFile.get_args() → Namespace

Retrieve arguments from parser

developer.ProcessInfoFile.delete_info_file(info_file_path: str) → None

Delete an info file at the specified path.

Parameters:

info_file_path – Path to the info file to be removed.

Raises:

OSError – Prints a warning if the file cannot be deleted.